{ "_id": "6a1f0c8fb401979e7341cd51", "Package": "ArctosR", "Title": "An Interface to the 'Arctos' Database", "Version": "0.1.4", "Authors@R": "c(\nperson(\"Harlan R.\", \"Williams\", email = \"harlanrhwilliams@gmail.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0000-9958-121X\")),\nperson(\"Jocelyn P.\", \"Colella\", email = \"colella@ku.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-2463-1029\")),\nperson(\"Vijay\", \"Barve\", email = \"vijay.barve@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-4852-2567\")),\nperson(\"Michelle S.\", \"Koo\", email = \"mkoo@berkeley.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-0410-722X\")),\nperson(\"Marlon E.\", \"Cobos\", email = \"manubio13@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-2611-1767\")))", "Maintainer": "Harlan R. Williams ", "Date": "2026-4-17", "Description": "Performs requests to the 'Arctos' API to download data.\nProvides a set of builder classes for performing complex\nrequests, as well as a set of simple functions for automating\nmany common requests and workflows. More information about\n'Arctos' can be found in Cicero et al. (2024)\n or on their website\n.", "URL": "https://github.com/hrhwilliams/arctosr,\nhttps://hrhwilliams.github.io/ArctosR/", "BugReports": "https://github.com/hrhwilliams/arctosr/issues", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libssl-dev", "Repository": "https://hrhwilliams.r-universe.dev", "Date/Publication": "2026-04-17 17:41:56 UTC", "RemoteUrl": "https://github.com/hrhwilliams/arctosr", "RemoteRef": "HEAD", "RemoteSha": "88edd34306dcf29fb679449c993b9008691cec1d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-17 09:29:09 UTC", "User": "root" }, "Author": "Harlan R. Williams [aut, cre] (ORCID:\n),\nJocelyn P. Colella [aut] (ORCID:\n),\nVijay Barve [aut] (ORCID: ),\nMichelle S. Koo [aut] (ORCID: ),\nMarlon E. Cobos [aut] (ORCID: )", "MD5sum": "5d144e26de155fc70d22e5f9806b4283", "_user": "hrhwilliams", "_type": "src", "_file": "ArctosR_0.1.4.tar.gz", "_fileid": "eb5f349e79d0e51e9b0c366d065afdfd1ac21cc8298861a2b9631dab7deba34c", "_filesize": 10138105, "_sha256": "eb5f349e79d0e51e9b0c366d065afdfd1ac21cc8298861a2b9631dab7deba34c", "_created": "2026-05-17T09:29:09.000Z", "_published": "2026-06-02T17:02:07.308Z", "_distro": "noble", "_jobs": [ { "job": 79126929744, "time": 145, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7041240964" }, { "job": 79126929727, "time": 149, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7041241667" }, { "job": 79126929806, "time": 183, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7041242084" }, { "job": 79126929720, "time": 140, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7041237245" }, { "job": 79126928726, "time": 265, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7041224890" }, { "job": 79126928902, "time": 121, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7364509397" }, { "job": 79126929796, "time": 102, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7041236221" }, { "job": 79126930679, "time": 100, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7041236560" }, { "job": 79126929757, "time": 88, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7041234799" } ], "_buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/hrhwilliams/arctosr", "_commit": { "id": "88edd34306dcf29fb679449c993b9008691cec1d", "author": "Harlan Williams ", "committer": "Harlan Williams ", "message": "add bergmann's rule doc to list of changes\n", "time": 1776447716 }, "_maintainer": { "name": "Harlan R. Williams", "email": "harlanrhwilliams@gmail.com", "login": "hrhwilliams", "description": "", "uuid": 41646656 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "R6", "version": ">= 2.5.1", "role": "Imports" }, { "package": "curl", "version": ">= 5.0.0", "role": "Imports" }, { "package": "jsonlite", "version": ">= 1.8.0", "role": "Imports" }, { "package": "geodata", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "ggspatial", "role": "Suggests" }, { "package": "ggtext", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "kuenm2", "role": "Suggests" }, { "package": "maps", "role": "Suggests" }, { "package": "patchwork", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "sf", "role": "Suggests" }, { "package": "terra", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "hrhwilliams", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-26", "n": 4 }, { "week": "2025-27", "n": 22 }, { "week": "2025-28", "n": 6 }, { "week": "2025-29", "n": 10 }, { "week": "2025-33", "n": 2 }, { "week": "2025-34", "n": 6 }, { "week": "2025-35", "n": 3 }, { "week": "2025-37", "n": 4 }, { "week": "2025-38", "n": 6 }, { "week": "2025-39", "n": 21 }, { "week": "2025-40", "n": 11 }, { "week": "2025-41", "n": 1 }, { "week": "2025-44", "n": 5 }, { "week": "2025-48", "n": 3 }, { "week": "2025-49", "n": 12 }, { "week": "2025-51", "n": 1 }, { "week": "2026-04", "n": 1 }, { "week": "2026-14", "n": 12 }, { "week": "2026-15", "n": 2 }, { "week": "2026-16", "n": 2 } ], "_tags": [ { "name": "v0.1.2", "date": "2025-09-15" }, { "name": "v0.1.3", "date": "2025-09-22" } ], "_topics": [ "biology", "gsoc-2024", "research", "specimen-records" ], "_stars": 6, "_contributors": [ { "user": "hrhwilliams", "count": 262, "uuid": 41646656 }, { "user": "marlonecobos", "count": 9, "uuid": 19596631 }, { "user": "jpcolella", "count": 1, "uuid": 21104272 } ], "_userbio": { "uuid": 41646656, "type": "user", "name": "Harlan Williams" }, "_downloads": { "count": 201, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ArctosR" }, "_devurl": "https://github.com/hrhwilliams/arctosr", "_pkgdown": "https://hrhwilliams.github.io/ArctosR/", "_searchresults": 29, "_rbuild": "4.6.0", "_assets": [ "extra/ArctosR.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/hrhwilliams/arctosr", "_realowner": "hrhwilliams", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2025-07-11" }, { "version": "0.1.1", "date": "2025-07-15" }, { "version": "0.1.2", "date": "2025-09-15" }, { "version": "0.1.3", "date": "2025-09-23" } ], "_exports": [ "CatalogRequestBuilder", "check_for_status", "expand_column", "FromResponseRequestBuilder", "get_error_response", "get_last_response_url", "get_query_parameters", "get_record_count", "get_records", "get_relationships", "get_request_url", "get_result_parameters", "InfoRequestBuilder", "Metadata", "Query", "read_response_rds", "Records", "Request", "RequestBuilder", "Response", "response_data", "save_response_csv", "save_response_rds" ], "_help": [ { "page": "ArctosR-package", "title": "ArctosR: An Interface to the Arctos Database", "topics": [ "ArctosR-package", "ArctosR" ] }, { "page": "CatalogRequestBuilder", "title": "CatalogRequestBuilder", "topics": [ "CatalogRequestBuilder" ] }, { "page": "check_for_status", "title": "Check if the query object ends with a successful response", "topics": [ "check_for_status" ] }, { "page": "expand_column", "title": "Expand information of columns in JSON format", "topics": [ "expand_column" ] }, { "page": "FromResponseRequestBuilder", "title": "FromResponseRequestBuilder", "topics": [ "FromResponseRequestBuilder" ] }, { "page": "get_error_response", "title": "Get the last error message of a query object", "topics": [ "get_error_response" ] }, { "page": "get_last_response_url", "title": "Get the last URL used by a request in a query object", "topics": [ "get_last_response_url" ] }, { "page": "get_query_parameters", "title": "Get parameters to perform queries", "topics": [ "get_query_parameters" ] }, { "page": "get_record_count", "title": "Count number of records in a query", "topics": [ "get_record_count" ] }, { "page": "get_records", "title": "Get records from Arctos based on a query", "topics": [ "get_records" ] }, { "page": "get_relationships", "title": "Get the relationships (e.g. \"host of\") a cataloged item has", "topics": [ "get_relationships" ] }, { "page": "get_request_url", "title": "Get the first URL in a completed query", "topics": [ "get_request_url" ] }, { "page": "get_result_parameters", "title": "Get parameters to define valid results in queries", "topics": [ "get_result_parameters" ] }, { "page": "InfoRequestBuilder", "title": "InfoRequestBuilder", "topics": [ "InfoRequestBuilder" ] }, { "page": "Metadata", "title": "Metadata", "topics": [ "Metadata" ] }, { "page": "Query", "title": "Query", "topics": [ "Query" ] }, { "page": "read_response_rds", "title": "Read query records previously saved as an RDS file", "topics": [ "read_response_rds" ] }, { "page": "Records", "title": "Records", "topics": [ "Records" ] }, { "page": "Request", "title": "Request", "topics": [ "Request" ] }, { "page": "RequestBuilder", "title": "RequestBuilder", "topics": [ "RequestBuilder" ] }, { "page": "Response", "title": "Response", "topics": [ "Response" ] }, { "page": "response_data", "title": "Get query records as a data frame", "topics": [ "response_data" ] }, { "page": "save_response_csv", "title": "save_response_csv", "topics": [ "save_response_csv" ] }, { "page": "save_response_rds", "title": "Write query records as an RDS file", "topics": [ "save_response_rds" ] } ], "_readme": "https://github.com/hrhwilliams/arctosr/raw/HEAD/README.md", "_rundeps": [ "curl", "jsonlite", "R6" ], "_vignettes": [ { "source": "overview.Rmd", "filename": "overview.html", "title": "An overview of ArctosR", "engine": "knitr::rmarkdown", "headings": [ "Basics", "API key", "Types of data in Arctos", "Queries and responses in ArctosR", "Query objects", "Response objects", "Metadata", "Making queries to Arctos", "A basic query", "Requesting other columns than the core set", "Requesting columns that are tables", "Requesting all records", "Downloading and using data from Arctos", "Get and view data", "Filter by", "Expanding columns", "Saving data", "Saving as a flat CSV file", "Saving an expanded CSV", "Saving as an RDS", "Saving query metadata" ], "created": "2024-09-26 17:42:31", "modified": "2026-04-01 04:33:46", "commits": 10 }, { "source": "bergmann_rule.Rmd", "filename": "bergmann_rule.html", "title": "Exploring patterns of Bergmann’s rule", "engine": "knitr::rmarkdown", "headings": [ "Querying Arctos for relevant data", "Processing query to obtain size", "Exploring if Bergmann’s rule applies to this example" ], "created": "2026-04-07 21:22:40", "modified": "2026-04-07 21:22:40", "commits": 1 }, { "source": "tissue.Rmd", "filename": "tissue.html", "title": "Frozen tissue search", "engine": "knitr::rmarkdown", "headings": [ "Exploring Arctos options", "Requesting data" ], "created": "2025-09-24 15:49:40", "modified": "2026-03-31 21:41:50", "commits": 17 }, { "source": "parasite.Rmd", "filename": "parasite.html", "title": "Parasite search and mapping", "engine": "knitr::rmarkdown", "headings": [ "Exploring Arctos options", "Requesting data", "Filtering by attributes", "Plotting spatial data", "Viewing relationships" ], "created": "2025-09-24 15:49:40", "modified": "2026-03-31 21:41:50", "commits": 14 }, { "source": "enm.Rmd", "filename": "enm.html", "title": "Performing ecological niche modeling with ArctosR data", "engine": "knitr::rmarkdown", "headings": [ "Querying Arctos for occurrence records", "Filtering and cleaning data for kuenm2", "Downloading environmental data", "Cleaning and preparing data for ENM", "ENM process using kuenm2", "Visualizing model prediction" ], "created": "2026-03-31 16:27:45", "modified": "2026-04-07 21:22:40", "commits": 6 }, { "source": "species.Rmd", "filename": "species.html", "title": "Species search and mapping", "engine": "knitr::rmarkdown", "headings": [ "Exploring Arctos options", "Requesting data", "Plotting data" ], "created": "2025-09-24 15:49:40", "modified": "2026-03-31 20:58:34", "commits": 16 } ], "_score": 7.319730494330225, "_indexed": true, "_nocasepkg": "arctosr", "_universes": [ "hrhwilliams" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.4", "date": "2026-05-17T09:31:36.000Z", "distro": "noble", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "85ef617243f71308a90408ab72d46ecbe5315052475218d55b2d3719a17cb663", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.6.0", "os": "linux", "version": "0.1.4", "date": "2026-05-17T09:31:40.000Z", "distro": "noble", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "9d7fa305fcdde670ba6843a26062943f1c7d7f7b5065e2d5746625c6a2659fa4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.5.3", "os": "mac", "version": "0.1.4", "date": "2026-05-17T09:31:46.000Z", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "26b2418e232a9e260c5de983ad9de99243b395fbe3ca71a60e7a8022a52755d0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.6.0", "os": "mac", "version": "0.1.4", "date": "2026-05-17T09:31:04.000Z", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "973bc389562da1e5ee0d5f76fda847a209933e01f2561ed61a6e1893f5a503ba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.7.0", "os": "win", "version": "0.1.4", "date": "2026-05-17T09:30:46.000Z", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "9e6f52aae623a34791e28c81ac4776e21a787f879f792ab0063204e172b0896e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.5.3", "os": "win", "version": "0.1.4", "date": "2026-05-17T09:30:44.000Z", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "5a76532f62b3df3575e3d99d7248ffb97660c16003949fc20d2005caeb66ec6f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.6.0", "os": "win", "version": "0.1.4", "date": "2026-05-17T09:30:35.000Z", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "577463b05827148f8336b1e4e8ecc145f99aab33671e1f9060603d43482ef65c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.4", "date": "2026-06-02T17:01:32.000Z", "commit": "88edd34306dcf29fb679449c993b9008691cec1d", "fileid": "afae8ae21e5e530d1a77c7472357ee55341835e809fc9010a4b25867092692d9", "status": "success", "buildurl": "https://github.com/r-universe/hrhwilliams/actions/runs/25987032930" } ] }