Package: ArctosR 0.1.4

ArctosR: An Interface to the 'Arctos' Database

Performs requests to the 'Arctos' API to download data. Provides a set of builder classes for performing complex requests, as well as a set of simple functions for automating many common requests and workflows. More information about 'Arctos' can be found in Cicero et al. (2024) <doi:10.1371/journal.pone.0296478> or on their website <https://arctosdb.org/>.

Authors:Harlan R. Williams [aut, cre], Jocelyn P. Colella [aut], Vijay Barve [aut], Michelle S. Koo [aut], Marlon E. Cobos [aut]

ArctosR_0.1.4.tar.gz
ArctosR_0.1.4.zip(r-4.7-any)ArctosR_0.1.4.zip(r-4.6-any)ArctosR_0.1.4.zip(r-4.5-any)
ArctosR_0.1.4.tgz(r-4.6-any)ArctosR_0.1.4.tgz(r-4.5-any)
ArctosR_0.1.4.tar.gz(r-4.7-any)ArctosR_0.1.4.tar.gz(r-4.6-any)
ArctosR_0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ArctosR/json (API)

# Install 'ArctosR' in R:
install.packages('ArctosR', repos = c('https://hrhwilliams.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hrhwilliams/arctosr/issues

Pkgdown/docs site:https://hrhwilliams.github.io

On CRAN:

Conda:

biologygsoc-2024researchspecimen-records

7.25 score 6 stars 29 scripts 281 downloads 23 exports 3 dependencies

Last updated from:88edd34306. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK189
source / vignettesOK298
linux-release-x86_64OK154
macos-release-arm64OK166
macos-oldrel-arm64OK168
windows-develOK82
windows-releaseOK82
windows-oldrelOK95
wasm-releaseOK142

Exports:CatalogRequestBuildercheck_for_statusexpand_columnFromResponseRequestBuilderget_error_responseget_last_response_urlget_query_parametersget_record_countget_recordsget_relationshipsget_request_urlget_result_parametersInfoRequestBuilderMetadataQueryread_response_rdsRecordsRequestRequestBuilderResponseresponse_datasave_response_csvsave_response_rds

Dependencies:curljsonliteR6

Exploring patterns of Bergmann’s rule
Querying Arctos for relevant data | Processing query to obtain size | Exploring if Bergmann’s rule applies to this example
Rendered frombergmann_rule.Rmdusingknitr::rmarkdown

Last update: 2026-04-07
Started: 2026-04-07

Performing ecological niche modeling with ArctosR data
Querying Arctos for occurrence records | Filtering and cleaning data for kuenm2 | Downloading environmental data | Cleaning and preparing data for ENM | ENM process using kuenm2 | Visualizing model prediction
Rendered fromenm.Rmdusingknitr::rmarkdown

Last update: 2026-04-07
Started: 2026-03-31

An overview of ArctosR
Basics | API key | Types of data in Arctos | Queries and responses in ArctosR | Query objects | Response objects | Metadata | Making queries to Arctos | A basic query | Requesting other columns than the core set | Requesting columns that are tables | Requesting all records | Downloading and using data from Arctos | Get and view data | Filter by | Expanding columns | Saving data | Saving as a flat CSV file | Saving an expanded CSV | Saving as an RDS | Saving query metadata
Rendered fromoverview.Rmdusingknitr::rmarkdown

Last update: 2026-04-01
Started: 2024-09-26

Frozen tissue search
Exploring Arctos options | Requesting data
Rendered fromtissue.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2025-09-24

Parasite search and mapping
Exploring Arctos options | Requesting data | Filtering by attributes | Plotting spatial data | Viewing relationships
Rendered fromparasite.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2025-09-24

Species search and mapping
Exploring Arctos options | Requesting data | Plotting data
Rendered fromspecies.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2025-09-24